Resume
Academic profile, experience, education, and selected publications.
Education
M.S. Biological Science
B.S. Biological Science
Experience
GutResearch @AmsterdamUMC - PhD candidate
Developing machine learning and bioinformatics pipelines to identify biomarkers for predicting treatment response in inflammatory bowel disease, while investigating the biological mechanisms and molecular pathways underlying heterogeneous patient outcomes.
Skills:pythonRscikit-learnPytorchDNA methylationmulti-omics
Qulab @USTC - B.Sc. and M.Sc. Intern
Gained broad research experience spanning single-cell multi-omics, spatial transcriptomics, and circulomics, encompassing both wet lab library preparation and dry lab analysis. Contributed to pipeline development, benchmarking studies, and the computational analysis and biological interpretation of high-dimensional omics datasets.
Skills:pythonRNextflow / SnakemakescRNA-seqscATAC-seqPCRcell culture
Publications
- Spatial and single-cell characterization of human glioblastoma tumor microenvironment reveals malignant cellular communities. Nature Neuroscience, 2026
- Detection of primary cancer types via fragment size selection in circulating cell-free extrachromosomal circular DNA. Genome Medicine, 2026
- Spatial Transcriptomics of Human Decidua Identifies Molecular Signatures in Recurrent Pregnancy Loss. Genomics, Proteomics & Bioinformatics, 2025
- Comparative analysis of methodologies for detecting extrachromosomal circular DNA. Nature Communications, 2024
- eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. Briefings in Bioinformatics, 2024
- Nickle-cobalt alloy nanocrystals inhibit activation of inflammasomes. National Science Review, 2023
- Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution. Nature Methods, 2022